From 2dabb156a1733ef1ecacc3c8e96925fa022e9804 Mon Sep 17 00:00:00 2001
From: Benjamin Mako Hill <mako@atdot.cc>
Date: Mon, 25 Jan 2016 08:58:09 -0800
Subject: [PATCH 1/3] make .tex files .PRECIOUS

This is not necessary in the default arragement but it becomes important
if/when we switch to having it be for Rnw/Rtex files.
---
 paper_template/Makefile | 1 +
 1 file changed, 1 insertion(+)

diff --git a/paper_template/Makefile b/paper_template/Makefile
index 05b7746..12f4232 100644
--- a/paper_template/Makefile
+++ b/paper_template/Makefile
@@ -33,3 +33,4 @@ vc:
 pdf: all
 
 .PHONY: clean all
+# .PRECIOUS: %.tex

From 31158d210fb825084dfdb15cc4e4798d4702dc93 Mon Sep 17 00:00:00 2001
From: Benjamin Mako Hill <mako@atdot.cc>
Date: Wed, 3 Feb 2016 11:28:58 -0800
Subject: [PATCH 2/3] updated color of git info to be red

The previous blue was confusing because it looked like a hyperlink.
---
 paper_template/mako-mem.sty | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/paper_template/mako-mem.sty b/paper_template/mako-mem.sty
index 5f80e40..d8f9fd7 100644
--- a/paper_template/mako-mem.sty
+++ b/paper_template/mako-mem.sty
@@ -209,8 +209,8 @@
 \makepsmarks{mako-mem-git}{\@gitmarks}
 \makeevenhead{mako-mem-git}{}{}{\scshape\thepage}
 \makeoddhead{mako-mem-git}{}{}{\scshape\thepage}
-\makeevenfoot{mako-mem-git}{}{\texttt{\footnotesize{\textcolor{Blue}{git revision \VCRevision\ on \VCDateTEX}}}}{}
-\makeoddfoot{mako-mem-git}{}{\texttt{\footnotesize \textcolor{Blue}{git revision \VCRevision\ on \VCDateTEX}}}{}
+\makeevenfoot{mako-mem-git}{}{\texttt{\footnotesize{\textcolor{BrickRed}{git revision \VCRevision\ on \VCDateTEX}}}}{}
+\makeoddfoot{mako-mem-git}{}{\texttt{\footnotesize \textcolor{BrickRed}{git revision \VCRevision\ on \VCDateTEX}}}{}
 
 %% Create a command to make a note at the top of the first page describing the
 %% publication status of the paper. 

From 0e7100a49ee2a16878e527fee4e81d5a4b578723 Mon Sep 17 00:00:00 2001
From: Benjamin Mako Hill <mako@atdot.cc>
Date: Wed, 3 Aug 2016 15:53:11 -0400
Subject: [PATCH 3/3] updated to use biber/biblatex instead of bitex

---
 paper_template/.gitignore |  2 ++
 paper_template/Makefile   | 11 +++--------
 paper_template/text.tex   | 23 ++++++++++++++++-------
 3 files changed, 21 insertions(+), 15 deletions(-)

diff --git a/paper_template/.gitignore b/paper_template/.gitignore
index 7599c73..5504ab4 100644
--- a/paper_template/.gitignore
+++ b/paper_template/.gitignore
@@ -11,3 +11,5 @@
 /*.fdb_latexmk
 /*.fls
 /*.ttt
+/*.bcf
+/*.run.xml
diff --git a/paper_template/Makefile b/paper_template/Makefile
index 12f4232..8e9b554 100644
--- a/paper_template/Makefile
+++ b/paper_template/Makefile
@@ -7,19 +7,14 @@ all: $(patsubst %.tex,%.pdf,$(wildcard *.tex))
 # %.tex: %.Rnw
 #	Rscript -e "library(knitr); knit('$<')"
 
-refs-processed.bib: 
-	perl -p -e 's/©//' refs.bib > refs-processed.bib
-	perl -0pe 's/,\s+(file|abstract) = \{.*?\}(,\n|\n)/\2/sg' refs-processed.bib |sponge refs-processed.bib
-	recode -d u8..ltex < refs-processed.bib | sponge refs-processed.bib
-
-%.pdf: %.tex refs-processed.bib vc
+%.pdf: %.tex 
 	latexmk -f -pdf $<
 
 clean: 
 	latexmk -C *.tex
-	rm -f *.tmp
+	rm -f *.tmp *.run.xml
 	rm -f vc
-	rm -f refs-processed.bib
+	rm -f *.bbl
 	# the following lines are useful for Rnw/knitr
 	# rm -rf cache/ figure/
 	# rm -f *.tex
diff --git a/paper_template/text.tex b/paper_template/text.tex
index 2ae4f95..a59dfbd 100644
--- a/paper_template/text.tex
+++ b/paper_template/text.tex
@@ -8,8 +8,7 @@
 % with article-3 \chapterstyle, change to: \pagestyle{memo}
 \pagestyle{mako-mem}
 
-\usepackage{ucs}
-\usepackage[utf8x]{inputenc}
+\usepackage[utf8]{inputenc}
 
 \usepackage[T1]{fontenc}
 \usepackage{textcomp}
@@ -34,7 +33,19 @@
     urlcolor=Blue, unicode=true}
 
 % add bibliographic stuff 
-\usepackage[round]{natbib}
+% add bibliographic stuff 
+\usepackage[american]{babel}
+\usepackage{csquotes}
+\usepackage[natbib=true, style=apa, backend=biber]{biblatex}
+\addbibresource{refs.bib}
+\DeclareLanguageMapping{american}{american-apa}
+
+\defbibheading{secbib}[\bibname]{%
+  \section*{#1}%
+  \markboth{#1}{#1}%
+  \baselineskip 14.2pt%
+  \prebibhook}
+
 \def\citepos#1{\citeauthor{#1}'s (\citeyear{#1})}
 \def\citespos#1{\citeauthor{#1}' (\citeyear{#1})}
 
@@ -162,10 +173,8 @@ lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
 fox jumps over the lazy dog \citep{989866}.
 
 % bibliography here
-\renewcommand{\bibsection}{\section{\bibname}\prebibhook}
-\baselineskip 14.2pt
-\bibliography{refs-processed}
-\bibliographystyle{apalike}
+\printbibliography[title = {References}, heading=secbib]
+
 
 \end{document}