fix code to work with bzip files
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@ -269,7 +269,7 @@ def open_input_file(input_filename):
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elif re.match(r'.*\.gz', input_filename):
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elif re.match(r'.*\.gz', input_filename):
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cmd = ["zcat", input_filename]
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cmd = ["zcat", input_filename]
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elif re.match(r'.*\.bz2', input_filename):
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elif re.match(r'.*\.bz2', input_filename):
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cmd = ["zcat", input_filename]
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cmd = ["bzcat", input_filename]
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try:
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try:
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input_file = Popen(cmd, stdout=PIPE).stdout
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input_file = Popen(cmd, stdout=PIPE).stdout
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