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changes for archiving.

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This commit is contained in:
Nathan TeBlunthuis
2023-05-23 17:18:19 -07:00
parent 811a0d87c4
commit 07b0dff9bc
47 changed files with 396 additions and 1549 deletions
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19
density/Makefile
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@@ -1,16 +1,7 @@
all: /gscratch/comdata/output/reddit_density/comment_terms_10000.feather /gscratch/comdata/output/reddit_density/comment_authors_10000.feather /gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10000.feather
all: ../../data/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather
/gscratch/comdata/output/reddit_density/comment_terms_10000.feather:overlap_density.py /gscratch/comdata/output/reddit_similarity/comment_terms_10000.feather /gscratch/comdata/output/reddit_similarity/comment_terms_10000.feather
start_spark_and_run.sh 1 overlap_density.py terms --inpath="/gscratch/comdata/output/reddit_similarity/comment_terms_10000.feather" --outpath="/gscratch/comdata/output/reddit_density/comment_terms_10000.feather" --agg=pd.DataFrame.sum
../../data/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather: overlap_density.py ../../data/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather
../start_spark_and_run.sh 1 overlap_density.py authors --inpath="../../data/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather" --outpath="../../data/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather" --agg=pd.DataFrame.sum
/gscratch/comdata/output/reddit_density/comment_authors_10000.feather:overlap_density.py /gscratch/comdata/output/reddit_similarity/comment_authors_10000.feather
start_spark_and_run.sh 1 overlap_density.py authors --inpath="/gscratch/comdata/output/reddit_similarity/comment_authors_10000.feather" --outpath="/gscratch/comdata/output/reddit_density/comment_authors_10000.feather" --agg=pd.DataFrame.sum
/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10000.feather: overlap_density.py /gscratch/comdata/output/reddit_similarity/subreddit_author_tf_similarities_10000.parquet
start_spark_and_run.sh 1 overlap_density.py authors --inpath="/gscratch/comdata/output/reddit_similarity/subreddit_author_tf_similarities_10000.parquet" --outpath="/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10000.feather" --agg=pd.DataFrame.sum
/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10K_LSI/850.feather: overlap_density.py /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/850.feather
start_spark_and_run.sh 1 overlap_density.py authors --inpath="/gscratch/comdata/output/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/850.feather" --outpath="/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10K_LSI/850.feather" --agg=pd.DataFrame.sum
/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather: overlap_density.py /gscratch/comdata/output/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather
start_spark_and_run.sh 1 overlap_density.py authors --inpath="/gscratch/comdata/output/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather" --outpath="/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather" --agg=pd.DataFrame.sum
../../data/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather:
$(MAKE) -C ../similarities

6
density/job_script.sh
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@@ -1,4 +1,6 @@
#!/usr/bin/bash
source ~/.bashrc
echo $(hostname)
start_spark_cluster.sh
singularity exec /gscratch/comdata/users/nathante/cdsc_base.sif spark-submit --master spark://$(hostname).hyak.local:7077 overlap_density.py authors --inpath=/gscratch/comdata/output/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather --outpath=/gscratch/comdata/output/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather --agg=pd.DataFrame.sum
singularity exec /gscratch/comdata/users/nathante/cdsc_base.sif stop-all.sh
spark-submit --verbose --master spark://$(hostname):43015 overlap_density.py authors --inpath=../../data/reddit_similarity/subreddit_comment_authors-tf_10k_LSI/600.feather --outpath=../../data/reddit_density/subreddit_author_tf_similarities_10K_LSI/600.feather --agg=pd.DataFrame.sum
stop-all.sh