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use duckdb not spark to prepare for weekly similarities.

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This commit is contained in:
Nathan TeBlunthuis 2024-12-28 13:45:17 -08:00
parent 74ee86e443
commit 104b708ff6
1 changed files with 10 additions and 11 deletions
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21
similarities/weekly_cosine_similarities.py
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@ -3,6 +3,7 @@ from pyspark.sql import functions as f
from pyspark.sql import SparkSession
from pyspark.sql import Window
import numpy as np
import duckdb
import pyarrow
import pyarrow.dataset as ds
import pandas as pd
@ -72,23 +73,21 @@ def cosine_similarities_weekly_lsi(*args, n_components=100, lsi_model=None, **kw
return cosine_similarities_weekly(*args, simfunc=simfunc, **kwargs)
#tfidf = spark.read.parquet('/gscratch/comdata/users/nathante/subreddit_tfidf_weekly.parquet')
#tfidf = spark.read.parquet('/gscratch/comdata/users/nathante/competitive_exclusion_reddit/data/tfidf_weekly/comment_submission_terms_tfidf.parquet')
def cosine_similarities_weekly(tfidf_path, outfile, term_colname, included_subreddits = None, topN = None, simfunc=column_similarities, min_df=None,max_df=None):
print(outfile)
# do this step in parallel if we have the memory for it.
# should be doable with pool.map
conn = duckdb.connect()
subreddit_names = conn.execute(f"SELECT DISTINCT subreddit, subreddit_id from read_parquet('{tfidf_path}/*/*.parquet') ORDER BY subreddit_id;").df()
spark = SparkSession.builder.getOrCreate()
df = spark.read.parquet(tfidf_path)
# load subreddits + topN
subreddit_names = df.select(['subreddit','subreddit_id']).distinct().toPandas()
subreddit_names = subreddit_names.sort_values("subreddit_id")
nterms = df.select(f.max(f.col(term_colname + "_id")).alias('max')).collect()[0].max
weeks = df.select(f.col("week")).distinct().toPandas().week.values
spark.stop()
nterms = conn.execute(f"SELECT MAX({term_colname + '_id'}) as nterms FROM read_parquet('{tfidf_path}/*/*.parquet')").df()
nterms = nterms.nterms.values
weeks = conn.execute(f"SELECT DISTINCT week FROM read_parquet('{tfidf_path}/*/*.parquet')").df()
weeks = weeks.week.values
conn.close()
print(f"computing weekly similarities")
week_similarities_helper = partial(_week_similarities,simfunc=simfunc, tfidf_path=tfidf_path, term_colname=term_colname, outdir=outfile, min_df=min_df, max_df=max_df, included_subreddits=included_subreddits, topN=None, subreddit_names=subreddit_names,nterms=nterms)