diff --git a/multiple_iv_simulations/Makefile b/multiple_iv_simulations/Makefile index c656a7f..19cff01 100644 --- a/multiple_iv_simulations/Makefile +++ b/multiple_iv_simulations/Makefile @@ -20,7 +20,7 @@ example_1_jobs: 01_indep_differential.R simulation_base.R ${grid_sweep_script} s ${srun} uv run ${grid_sweep_script} --command "Rscript 01_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[1]}' --outfile example_1_jobs example_1.feather: example_1_jobs my_pylauncher.py - sbatch -J "multiple iv measerr correction" skx_5.sbatch my_pylauncher.py $< --cores 1 + sbatch -J "multiple iv measerr correction" skx_2.sbatch my_pylauncher.py $< --cores 1 remembr.RDS:example_1.feather # rm -f remembr.RDS diff --git a/multiple_iv_simulations/skx_2.sbatch b/multiple_iv_simulations/skx_2.sbatch new file mode 100644 index 0000000..ec630a0 --- /dev/null +++ b/multiple_iv_simulations/skx_2.sbatch @@ -0,0 +1,11 @@ +#!/bin/bash +#SBATCH --account=ECS24013 +#SBATCH --partition=skx +#SBATCH --nodes=2 +#SBATCH --chdir=/scratch/10114/nathante/ml_measurement_error_public/multiple_iv_simulations +#SBATCH --error="sbatch_log/%x_%A_%a.err" +#SBATCH --output="sbatch_log/%x_%A_%a.out" +#SBATCH --time=48:00:00 + +source ~/.bashrc +"$@"