diff --git a/multiple_iv_simulations/Makefile b/multiple_iv_simulations/Makefile index fe5fa0f..17e6b94 100644 --- a/multiple_iv_simulations/Makefile +++ b/multiple_iv_simulations/Makefile @@ -16,11 +16,11 @@ joblists:example_1_jobs example_2_jobs example_3_jobs grid_sweep_script=../simulations/grid_sweep.py -example_1_jobs: 01_indep_differential.R simulation_base.R ${grid_sweep_script} skx_1.sbatch ../misclassificationmodels +example_1_jobs: 01_indep_differential.R simulation_base.R ${grid_sweep_script} skx_dev.sbatch ../misclassificationmodels ${srun} --wait uv run ${grid_sweep_script} --command "Rscript 01_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[1]}' --outfile example_1_jobs example_1.feather: example_1_jobs my_pylauncher.py - sbatch -J "multiple iv measerr correction" skx_2.sbatch my_pylauncher.py $< --cores 1 + sbatch -J "multiple iv measerr correction" spr_2.sbatch my_pylauncher.py $< --cores 1 remembr.RDS:example_1.feather # rm -f remembr.RDS diff --git a/multiple_iv_simulations/skx_1.sbatch b/multiple_iv_simulations/skx_1.sbatch index f539ed5..1b1444a 100644 --- a/multiple_iv_simulations/skx_1.sbatch +++ b/multiple_iv_simulations/skx_1.sbatch @@ -1,11 +1,11 @@ #!/bin/bash #SBATCH --account=ECS24013 -#SBATCH --partition=skx +#SBATCH --partition=skx-dev #SBATCH --nodes=1 #SBATCH --chdir=/scratch/10114/nathante/ml_measurement_error_public/multiple_iv_simulations #SBATCH --error="sbatch_log/%x_%A_%a.err" #SBATCH --output="sbatch_log/%x_%A_%a.out" -#SBATCH --time=48:00:00 +#SBATCH --time=4:00:00 source ~/.bashrc "$@"