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add missing simulation code

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Nathan TeBlunthuis
2022-06-14 20:35:50 -07:00
parent 6057688060
commit e41d11afb9
16 changed files with 2050 additions and 0 deletions
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simulations/Makefile Normal file
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SHELL=bash
Ns=[1000,10000,25000]
ms=[50, 100, 250, 500]
seeds=[$(shell seq -s, 1 250)]
all:remembr.RDS
srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
example_1_jobs: example_1.R
grid_sweep.py --command "Rscript example_1.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
example_1.feather: example_1_jobs
rm -f example_1.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
example_2_jobs: example_2.R
grid_sweep.py --command "Rscript example_2.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs
example_2.feather: example_2_jobs
rm -f example_2.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
example_2_B_jobs: example_2_B.R
grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
example_2_B.feather: example_2_B_jobs
rm -f example_2_B.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
example_3_jobs: example_3.R
grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
example_3.feather: example_3_jobs
rm -f example_3.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs
remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather
${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3"
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
# example_2_B_mecor_jobs:
# grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
# example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
# rm -f example_2_B_mecor.feather
# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs