62 lines
2.7 KiB
Makefile
62 lines
2.7 KiB
Makefile
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SHELL=bash
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Ns=[500,1000,10000,25000]
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ms=[50, 100, 250, 500]
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seeds=[$(shell seq -s, 1 250)]
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all:remembr.RDS
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srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
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example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py
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grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
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example_1.feather: example_1_jobs
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rm -f example_1.feather
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sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs
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sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
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example_2_jobs: example_2.R
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grid_sweep.py --command "Rscript example_2.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs
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example_2.feather: example_2_jobs
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rm -f example_2.feather
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sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
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example_2_B_jobs: example_2_B.R
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grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
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example_2_B.feather: example_2_B_jobs
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rm -f example_2_B.feather
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sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
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example_3_jobs: example_3.R
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grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
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example_3.feather: example_3_jobs
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rm -f example_3.feather
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sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs
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remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather
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${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
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${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
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${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
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${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3"
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
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# example_2_B_mecor_jobs:
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# grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
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# example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
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# rm -f example_2_B_mecor.feather
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# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
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