diff --git a/12825_revision/misc_data_files/020525_README_manifest.csv b/12825_revision/misc_data_files/020525_README_manifest.csv
new file mode 100644
index 0000000..eb4e368
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diff --git a/12825_revision/misc_data_files/validation.ipynb b/12825_revision/misc_data_files/validation.ipynb
new file mode 100644
index 0000000..a53104b
--- /dev/null
+++ b/12825_revision/misc_data_files/validation.ipynb
@@ -0,0 +1,90 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pandas as pd\n",
+    "import os\n",
+    "import csv\n",
+    "from tqdm import tqdm\n",
+    "import fnmatch"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 9,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "csv_file = '/home/SOC.NORTHWESTERN.EDU/nws8519/git/24_deb_pkg_gov/12825_revision/misc_data_files/020525_README_manifest.csv' \n",
+    "df = pd.read_csv(csv_file)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 11,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "4227"
+      ]
+     },
+     "execution_count": 11,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "df['repo_id'].nunique()\n",
+    "#df['upstream_vcs_link'].nunique()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 12,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "[]"
+      ]
+     },
+     "execution_count": 12,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "nonunique_values_column1 = df['repo_id'].value_counts()[df['repo_id'].value_counts() > 1].index.tolist()\n",
+    "nonunique_values_column1"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "base",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.15"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/12825_revision/misc_data_files/validation.py b/12825_revision/misc_data_files/validation.py
index ebaa540..52d9367 100644
--- a/12825_revision/misc_data_files/validation.py
+++ b/12825_revision/misc_data_files/validation.py
@@ -1,9 +1,12 @@
 import pandas as pd
 import os
-'''
+import csv
+from tqdm import tqdm
+import fnmatch
+
 # Load the CSV file into a DataFrame
-csv_file = '020125_README_manifest.csv'  # Replace with your CSV file path
-column_name = 'new_filepath'     # Replace with your column name containing file paths
+csv_file = '/home/SOC.NORTHWESTERN.EDU/nws8519/git/24_deb_pkg_gov/12825_revision/misc_data_files/020525_README_manifest.csv'  # Replace with your CSV file path
+#column_name = 'new_filepath'     # Replace with your column name containing file paths
 
 # Read the CSV file
 df = pd.read_csv(csv_file)
@@ -20,7 +23,7 @@ missing_files_df = df[df['file_exists'] == False]
 # Print the DataFrame with missing file paths
 print("Files that do not exist:")
 print(missing_files_df)
-'''
+
 #source_directory = '/data/users/mgaughan/kkex/012825_cam_revision_main/second_batch/readme_commits'  # Replace with your source directory path
 #target_directory = '/data/users/mgaughan/kkex/012825_cam_revision_main/second_batch/first_version_documents/validation_readme'  # Replace with your target directory path
 
@@ -85,7 +88,6 @@ print(duplicate_rows)
 # Check which filenames in the directory are not reflected in the column
 missing_files = [file for file in filenames_in_csv if file not in directory_files]
 
-
 # Print the filenames that are not reflected in the column
 print("Filenames in the directory that are not reflected in the CSV column:")
 for file in missing_files:
@@ -102,3 +104,58 @@ for file in directory_files:
     filtered_df = df[df[column_name] == file]
     if len(filtered_df) != 1:
         print(filtered_df)
+'''
+'''
+with open("../misc_data_files/main/0205_README_publication_commits.csv", 'r') as file:
+    csv_reader = csv.DictReader(file) 
+    lines = [line for line in file]
+    new_manifest_list = []
+    missing_list = []
+    index = -1
+    for row in tqdm(csv.reader(lines), total=len(lines)):
+        index += 1
+        if index < 1:
+            continue
+        manifest_df = pd.DataFrame({
+                'commit_hash': [row[0]],
+                'upstream_vcs_link': [row[15]],
+                'repo_id': [row[13]],
+                'project_handle': [row[14]],
+                'lagged_hash': [row[12]],
+                'project_index': index
+            })
+        prefix = f"{index}_{manifest_df['repo_id'][0]}"
+        matched_file = ""
+        for filename in os.listdir("/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/"):
+            if fnmatch.fnmatch(filename, f'{prefix}*'):
+                matched_file = filename
+        if matched_file == "":
+            missing_list.append(manifest_df)
+        else:
+            manifest_df['new_filepath'] = matched_file
+            new_manifest_list.append(manifest_df)
+    manifest_df = pd.concat(new_manifest_list, ignore_index=True)
+    missing_df = pd.concat(missing_list, ignore_index=True)
+    missing_df.to_csv(f"020625_README_missing.csv", index=False)
+    manifest_df.to_csv(f"020525_README_manifest.csv", index=False)
+'''
+'''
+with open("/home/SOC.NORTHWESTERN.EDU/nws8519/git/24_deb_pkg_gov/12825_revision/misc_data_files/020625_README_missing.csv", 'r') as file:
+    lines = [line for line in file]
+    index = -1
+    dir_path = "/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/"
+    for row in tqdm(csv.reader(lines), total=len(lines)):
+        index += 1
+        if index < 0:
+            continue
+        prefix = f"{row[4]}_{row[2]}"
+        matched_file = ""
+        for filename in os.listdir(dir_path):
+            if fnmatch.fnmatch(filename, f'{prefix}*'):
+                matched_file = filename
+                break
+        
+        if matched_file:
+            new_filename = matched_file.replace(row[4], row[5], 1)
+            os.rename(os.path.join(dir_path, matched_file), os.path.join(dir_path, new_filename))
+'''
\ No newline at end of file
diff --git a/12825_revision/spec_file/020125_README_manifest.csv b/12825_revision/spec_file/020125_README_manifest.csv
new file mode 100644
index 0000000..ea78bea
--- /dev/null
+++ b/12825_revision/spec_file/020125_README_manifest.csv
@@ -0,0 +1,212 @@
+commit_hash,upstream_vcs_link,repo_id,project_handle,lagged_hash,project_index,new_filepath
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+2eb7d66a926b54401d5a635666d8dedf6cedce66,https://github.com/pwr/Solaar.git,pwr_Solaar.git,pwr/Solaar.git,565f09c49a1088c71919e3a31077990576a21b2f,565f09c49a1088c71919e3a31077990576a21b2f,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/565f09c49a1088c71919e3a31077990576a21b2f_pwr_Solaar.git_README
+72726609622bc094a56023a03991634c048ddf5a,https://github.com/resurrecting-open-source-projects/openrdate,resurrecting-open-source-projects_openrdate,resurrecting-open-source-projects/openrdate,ff12c3da9efc2f8810d650c8416079565c22b85e,ff12c3da9efc2f8810d650c8416079565c22b85e,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/ff12c3da9efc2f8810d650c8416079565c22b85e_resurrecting-open-source-projects_openrdate_README.md
+c379ce7b913aaaa136c3f3ac4542770068fc2ddc,https://gitlab.com/gnutls/libtasn1,gnutls_libtasn1,gnutls/libtasn1,c379ce7b913aaaa136c3f3ac4542770068fc2ddc,c379ce7b913aaaa136c3f3ac4542770068fc2ddc,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/c379ce7b913aaaa136c3f3ac4542770068fc2ddc_gnutls_libtasn1_README
+865546e5830e12445a34b3e27f3a86466dd7304a,https://github.com/ukui/ukui-indicators,ukui_ukui-indicators,ukui/ukui-indicators,865546e5830e12445a34b3e27f3a86466dd7304a,865546e5830e12445a34b3e27f3a86466dd7304a,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/865546e5830e12445a34b3e27f3a86466dd7304a_ukui_ukui-indicators_README.md
+2101bf45a9717238c48372c97688e28cad8acd02,https://github.com/zopefoundation/zope.schema,zopefoundation_zope.schema,zopefoundation/zope.schema,2101bf45a9717238c48372c97688e28cad8acd02,2101bf45a9717238c48372c97688e28cad8acd02,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/2101bf45a9717238c48372c97688e28cad8acd02_zopefoundation_zope.schema_README.txt
+e8acaa39be41e45d7f60482b0ca95f82f839f2f5,https://github.com/django-ldapdb/django-ldapdb,django-ldapdb_django-ldapdb,django-ldapdb/django-ldapdb,03591bef911916c17752bf4fe3e615984a9f5c7d,03591bef911916c17752bf4fe3e615984a9f5c7d,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/03591bef911916c17752bf4fe3e615984a9f5c7d_django-ldapdb_django-ldapdb_README.md
+851ee77dee007526d49ac91c01b0577812d7b86f,https://github.com/xiaoyeli/superlu.git,xiaoyeli_superlu.git,xiaoyeli/superlu.git,851ee77dee007526d49ac91c01b0577812d7b86f,851ee77dee007526d49ac91c01b0577812d7b86f,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/851ee77dee007526d49ac91c01b0577812d7b86f_xiaoyeli_superlu.git_README
+b8bb77b2dac258132aa6f3ca62a8cee90ec32e6f,https://github.com/ft/arename.git,ft_arename.git,ft/arename.git,e71dbad7a2b17503d35bf7c17ebce123a3f21438,e71dbad7a2b17503d35bf7c17ebce123a3f21438,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/e71dbad7a2b17503d35bf7c17ebce123a3f21438_ft_arename.git_README
+4cfdef405a15c4449d502516cbf82d09a5fc636a,https://github.com/droe/sslsplit,droe_sslsplit,droe/sslsplit,4cfdef405a15c4449d502516cbf82d09a5fc636a,4cfdef405a15c4449d502516cbf82d09a5fc636a,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/4cfdef405a15c4449d502516cbf82d09a5fc636a_droe_sslsplit_README
+33ebe7acec14b25c5f84f35a664803fcab2f7781,https://github.com/gitpython-developers/GitPython,gitpython-developers_GitPython,gitpython-developers/GitPython,ea6af04977c197fd07ab812d394dcb61feebaf67,ea6af04977c197fd07ab812d394dcb61feebaf67,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/ea6af04977c197fd07ab812d394dcb61feebaf67_gitpython-developers_GitPython_README
+1f7a25a5de29bcf019998f04eba32af95e067588,https://github.com/ccrma/chuck,ccrma_chuck,ccrma/chuck,70dc7f0c61db8b75807104589cf4fc52242a38d2,70dc7f0c61db8b75807104589cf4fc52242a38d2,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/70dc7f0c61db8b75807104589cf4fc52242a38d2_ccrma_chuck_README.md
+bf02d471515659846f34852032e7ce1d78eb7824,https://gitlab.com/pdftk-java/pdftk.git,pdftk-java_pdftk.git,pdftk-java/pdftk.git,bf02d471515659846f34852032e7ce1d78eb7824,bf02d471515659846f34852032e7ce1d78eb7824,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/bf02d471515659846f34852032e7ce1d78eb7824_pdftk-java_pdftk.git_README.md
+9de1be819d21a8960ee94710219f32a57931bd05,https://github.com/friendly/vcdExtra.git,friendly_vcdExtra.git,friendly/vcdExtra.git,b6d5a5cc8cab82437dba9b1e7473fdb9772c694d,b6d5a5cc8cab82437dba9b1e7473fdb9772c694d,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/b6d5a5cc8cab82437dba9b1e7473fdb9772c694d_friendly_vcdExtra.git_README.md
+16c4f5f0c18f8cd132ce6825d7bf1285d0fd50bc,https://github.com/chibisov/drf-extensions.git,chibisov_drf-extensions.git,chibisov/drf-extensions.git,056283279729ced95534abe8a73443510f929924,056283279729ced95534abe8a73443510f929924,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/056283279729ced95534abe8a73443510f929924_chibisov_drf-extensions.git_README.md
+bea0bd1b405ac1bc0f6e47beca572d6efc55c33c,https://github.com/typester/www-google-calculator-perl.git,typester_www-google-calculator-perl.git,typester/www-google-calculator-perl.git,bea0bd1b405ac1bc0f6e47beca572d6efc55c33c,bea0bd1b405ac1bc0f6e47beca572d6efc55c33c,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/bea0bd1b405ac1bc0f6e47beca572d6efc55c33c_typester_www-google-calculator-perl.git_README
+e30d4ad0a9d5a522e7b20d319f49f2276502ad8f,https://github.com/nelhage/reptyr,nelhage_reptyr,nelhage/reptyr,4cbc08a991c0b8332ec14356119a56d437b8ce0e,4cbc08a991c0b8332ec14356119a56d437b8ce0e,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/4cbc08a991c0b8332ec14356119a56d437b8ce0e_nelhage_reptyr_README
+77ffecc6f7c5bb6fe053893519110984d11ad4e8,https://github.com/Ettercap/ettercap.git,Ettercap_ettercap.git,Ettercap/ettercap.git,1d4ad9b225f144ffb06654a54dac0842b9dcfa89,1d4ad9b225f144ffb06654a54dac0842b9dcfa89,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/1d4ad9b225f144ffb06654a54dac0842b9dcfa89_Ettercap_ettercap.git_README.BINARIES
+57ec54032cc5ea5820ab6af5514f07668cafc231,https://github.com/OCamlPro/alt-ergo.git,OCamlPro_alt-ergo.git,OCamlPro/alt-ergo.git,57ec54032cc5ea5820ab6af5514f07668cafc231,57ec54032cc5ea5820ab6af5514f07668cafc231,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/57ec54032cc5ea5820ab6af5514f07668cafc231_OCamlPro_alt-ergo.git_README.md
+b5dd922abbdb4ab0ee477093be8c6bc60a5e9d24,https://gitlab.dune-project.org/core/dune-geometry,core_dune-geometry,core/dune-geometry,b5dd922abbdb4ab0ee477093be8c6bc60a5e9d24,b5dd922abbdb4ab0ee477093be8c6bc60a5e9d24,/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/b5dd922abbdb4ab0ee477093be8c6bc60a5e9d24_core_dune-geometry_README
diff --git a/12825_revision/spec_file/s_CONTRIBUTING-parsing-output.txt b/12825_revision/spec_file/s_CONTRIBUTING-parsing-output.txt
deleted file mode 100644
index 108026e..0000000
--- a/12825_revision/spec_file/s_CONTRIBUTING-parsing-output.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-https://github.com/ft/pkg-fdm, d092283752a8b87fe61f1675550e3de18f58e70e
-https://github.com/mate-desktop/caja-extensions.git, 8c996447beb0353ed76f48e3ee220bef2455382b
diff --git a/12825_revision/spec_file/s_README-parsing-output.txt b/12825_revision/spec_file/s_README-parsing-output.txt
index e69de29..bc271ca 100644
--- a/12825_revision/spec_file/s_README-parsing-output.txt
+++ b/12825_revision/spec_file/s_README-parsing-output.txt
@@ -0,0 +1,21 @@
+https://github.com/gcsideal/syslog-ng-debian, 9c005519e3c4cb5ef0efe4b21921aa13f0e6e0c3, 9c005519e3c4cb5ef0efe4b21921aa13f0e6e0c3
+https://github.com/ioquake/ioq3, 00cd405e5adb7542238ce9bf1370364531865728, 00cd405e5adb7542238ce9bf1370364531865728
+https://github.com/tikzit/tikzit.git, e1cf0babff63e670e0d550b4072c22649a117fa7, e1cf0babff63e670e0d550b4072c22649a117fa7
+https://github.com/lumean/svg-graph2, a0119478dae06b4af34f7d0e061201317567b21f, a0119478dae06b4af34f7d0e061201317567b21f
+https://gitlab.xiph.org/xiph/vorbis.git, 20c9770cc68d165a0cb7b8a332103b9659b29e4c, 20c9770cc68d165a0cb7b8a332103b9659b29e4c
+https://github.com/spesmilo/electrum.git, eedf13bfdb079371c3e905f7507fa82e42467af2, eedf13bfdb079371c3e905f7507fa82e42467af2
+https://github.com/PDAL/PDAL.git, a52d26f411adbc781bbbc8144e50887fc7ceaaba, a52d26f411adbc781bbbc8144e50887fc7ceaaba
+https://github.com/Beep6581/RawTherapee, 35548f96deed51b6e5c49ed8c0dd243576783bc3, 35548f96deed51b6e5c49ed8c0dd243576783bc3
+https://github.com/ukui/ukui-sidebar, 7587535a6b732f08619ca365d610631a466e2197, 7587535a6b732f08619ca365d610631a466e2197
+https://github.com/wojtekka/6tunnel, fdb3a3265fab6e403a7525071e0e161ff73e25bb, fdb3a3265fab6e403a7525071e0e161ff73e25bb
+https://github.com/chrys87/simple-orca-plugin-system.git, 56f1d2db1b7b0fdff0312ff8199bb885f3f93a3d, 56f1d2db1b7b0fdff0312ff8199bb885f3f93a3d
+https://github.com/kjn/lbzip2, 7c905684817019dada92fb5e4e09b23a2937927a, 7c905684817019dada92fb5e4e09b23a2937927a
+https://github.com/nicotine-plus/nicotine-plus, e9fc10c461deb62603cab6368ba5e82457ad876e, e9fc10c461deb62603cab6368ba5e82457ad876e
+https://github.com/lilydjwg/pssh.git, 340c70b85212106ce952de986f5f725dcb80a93e, 340c70b85212106ce952de986f5f725dcb80a93e
+https://github.com/socnetv/app, e0dac012e16c724f93a2cb9d8a54372a7a4f88b8, e0dac012e16c724f93a2cb9d8a54372a7a4f88b8
+https://github.com/jnwatson/py-lmdb, c7591acf9498d7bf1d4dbd7b22d96afd6370696b, c7591acf9498d7bf1d4dbd7b22d96afd6370696b
+https://github.com/angband/angband, e87b68e4de72aff66675e6ba8ed1963f8610ef16, e87b68e4de72aff66675e6ba8ed1963f8610ef16
+https://github.com/ClusterLabs/crmsh, 20c6e4996ff89ddc9fbd3c52c97ef85ece250e60, 20c6e4996ff89ddc9fbd3c52c97ef85ece250e60
+https://github.com/dosfstools/dosfstools.git, 124598b2bdfc9901ce4a612f4ef4e4c916a2faa3, 124598b2bdfc9901ce4a612f4ef4e4c916a2faa3
+https://github.com/skk-dev/skktools, 47d70ef264083de2ca8e786b5f52ca7d175d0bb5, 47d70ef264083de2ca8e786b5f52ca7d175d0bb5
+https://github.com/krig/parallax, 340c70b85212106ce952de986f5f725dcb80a93e, 340c70b85212106ce952de986f5f725dcb80a93e
\ No newline at end of file
diff --git a/12825_revision/spec_file/updated_get_spec_file.py b/12825_revision/spec_file/updated_get_spec_file.py
index 53e075f..ddf697e 100644
--- a/12825_revision/spec_file/updated_get_spec_file.py
+++ b/12825_revision/spec_file/updated_get_spec_file.py
@@ -7,7 +7,7 @@ import pandas as pd
 import time
 
 #destination DIR:
-dest_dir="/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/readme/"
+dest_dir="/data/users/mgaughan/kkex/012825_cam_revision_main/lagged_files/contributing/"
 #temp DIR:
 temp_dir="/data/users/mgaughan/tmp3/"
 
@@ -120,7 +120,7 @@ def for_all_files(csv_path, is_readme):
                 index += 1
                 if index < 1:
                     continue
-                time.sleep(5)
+                time.sleep(10)
                 manifest_df = pd.DataFrame({
                     'commit_hash': [row[0]],
                     'upstream_vcs_link': [row[15]],
@@ -129,14 +129,13 @@ def for_all_files(csv_path, is_readme):
                     'lagged_hash': [row[12]],
                     'project_index': index
                 })
-
                 _check, new_filepath = get_file(manifest_df['upstream_vcs_link'][0], manifest_df['lagged_hash'][0], is_readme, index)
                 manifest_df['new_filepath'] = new_filepath
 
                 if _check == True:
                     new_manifest_list.append(manifest_df)
                 else:
-                    parsing_error.append([manifest_df['upstream_vcs_link'][0], manifest_df['lagged_hash'][0]], index)
+                    parsing_error.append([manifest_df['upstream_vcs_link'][0], manifest_df['lagged_hash'][0], str(index)])
     except KeyboardInterrupt:
         print("KeyBoardInterrrupt")
     finally:
@@ -144,7 +143,7 @@ def for_all_files(csv_path, is_readme):
                 for error in parsing_error:
                     txt_file.write(', '.join(error) + "\n")
         manifest_df = pd.concat(new_manifest_list, ignore_index=True)
-        manifest_df.to_csv(f"020525_{doc}_manifest.csv", index=False)
+        manifest_df.to_csv(f"020125_{doc}_manifest.csv", index=False)
 
 if __name__ == "__main__":
-    for_all_files("../misc_data_files/main/0205_README_publication_commits.csv", True)
+    for_all_files("/home/SOC.NORTHWESTERN.EDU/nws8519/git/24_deb_pkg_gov/12825_revision/misc_data_files/020625_README_missing.csv", True)