75 lines
3.8 KiB
R
75 lines
3.8 KiB
R
# this is the file with the lmer multi-level rddAnalysis
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library(tidyverse)
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library(plyr)
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# 0 loading the readme data in
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try(setwd(dirname(rstudioapi::getActiveDocumentContext()$path)))
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readme_df <- read_csv("../final_data/deb_readme_did.csv")
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# 1 preprocessing
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#colnames(readme_df) <- c("upstream_vcs_link", "event_date", "event_hash", "before_all_ct", "before_mrg_ct", "after_all_ct", "after_mrg_ct", "before_auth_new", "after_commit_new", "after_auth_new", "before_commit_new")
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col_order <- c("upstream_vcs_link", "age_of_project", "event_date", "event_hash", "before_all_ct", "after_all_ct", "before_mrg_ct", "after_mrg_ct", "before_auth_new", "after_auth_new", "before_commit_new", "after_commit_new")
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readme_df <- readme_df[,col_order]
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readme_df$ct_before_all <- str_split(gsub("[][]","", readme_df$before_all_ct), ", ")
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readme_df$ct_after_all <- str_split(gsub("[][]","", readme_df$after_all_ct), ", ")
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readme_df$ct_before_mrg <- str_split(gsub("[][]","", readme_df$before_mrg_ct), ", ")
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readme_df$ct_after_mrg <- str_split(gsub("[][]","", readme_df$after_mrg_ct), ", ")
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drop <- c("before_all_ct", "before_mrg_ct", "after_all_ct", "after_mrg_ct")
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readme_df = readme_df[,!(names(readme_df) %in% drop)]
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# 2 some expansion needs to happens for each project
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expand_timeseries <- function(project_row) {
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longer <- project_row |>
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pivot_longer(cols = starts_with("ct"),
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names_to = "window",
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values_to = "count") |>
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unnest(count)
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longer$observation_type <- gsub("^.*_", "", longer$window)
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longer <- ddply(longer, "observation_type", transform, week=seq(from=0, by=1, length.out=length(observation_type)))
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longer$count <- as.numeric(longer$count)
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#longer <- longer[which(longer$observation_type == "all"),]
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return(longer)
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}
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expanded_data <- expand_timeseries(readme_df[1,])
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for (i in 2:nrow(readme_df)){
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expanded_data <- rbind(expanded_data, expand_timeseries(readme_df[i,]))
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}
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#filter out the windows of time that we're looking at
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window_num <- 8
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windowed_data <- expanded_data |>
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filter(week >= (26 - window_num) & week <= (26 + window_num)) |>
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mutate(D = ifelse(week > 26, 1, 0))
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#scale the age numbers
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windowed_data$scaled_project_age <- scale(windowed_data$age_of_project)
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#separate out the cleaning d
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all_actions_data <- windowed_data[which(windowed_data$observation_type == "all"),]
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mrg_actions_data <- windowed_data[which(windowed_data$observation_type == "mrg"),]
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#find some EDA to identify which types of models might be the best for this
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mean(all_actions_data$count)
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median(all_actions_data$count)
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table(all_actions_data$count)
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var(all_actions_data$count)
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qqnorm(all_actions_data$count)
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y <- qunif(ppoints(length(all_actions_data$count)))
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qqplot(all_actions_data$count, y)
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# 3 rdd in lmer analysis
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# rdd: https://rpubs.com/phle/r_tutorial_regression_discontinuity_design
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# lmer: https://www.youtube.com/watch?v=LzAwEKrn2Mc
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library(lme4)
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# https://www.bristol.ac.uk/cmm/learning/videos/random-intercepts.html#exvar
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# (D |upstream_vcs_link) or (week | upstream_vcs_link)
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poisson_all_model <- glmer(count ~ D + I(week - 26) + D:I(week - 26) + scaled_project_age + (week || upstream_vcs_link), data=all_actions_data, family = poisson(link = "log"))
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summary(poisson_all_model)
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poisson_residuals <- residuals(poisson_all_model)
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qqnorm(poisson_residuals)
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# for visualization, may have to run model for each project and then identify top 5 projects for RDD graphs
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#
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#
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poisson_mrg_model <- glmer(count ~ D + I(week - 26) + D:I(week - 26) + scaled_project_age + (week |upstream_vcs_link), data=mrg_actions_data, family = poisson(link = "log"))
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summary(poisson_mrg_model)
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poisson_mrg_residuals <- residuals(poisson_mrg_model)
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qqnorm(poisson_mrg_residuals)
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# Performance:
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library(merTools)
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ICC(outcome="count", group="week", data=all_actions_data)
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#testing for different types of models
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