diff --git a/020425_contributing_crescendo_model.rda b/020425_contributing_crescendo_model.rda deleted file mode 100644 index 08d4ae3..0000000 Binary files a/020425_contributing_crescendo_model.rda and /dev/null differ diff --git a/cleaning_scripts/verifying_count_on_manifest.R b/cleaning_scripts/verifying_count_on_manifest.R new file mode 100644 index 0000000..7678bd2 --- /dev/null +++ b/cleaning_scripts/verifying_count_on_manifest.R @@ -0,0 +1,19 @@ +library(dplyr) +count_path <- "/mmfs1/gscratch/comdata/users/mjilg/govdoc-cr-data/final_data/metadata/co_0205_CONTRIBUTING_weekly_count_data.csv" +manifest_path <- "validation/020525_CONTRIBUTING_manifest.csv" + +count_df <- read.csv(count_path) +manifest_df <- read.csv(manifest_path) +length(unique(count_df$project_id)) + +unique_project_ids <- unique(count_df$project_id) +missing_project_ids <- setdiff(unique_project_ids, manifest_df$repo_id) +missing_project_ids + + +count_df_filtered <- count_df %>% filter(!project_id %in% missing_project_ids) +length(unique(count_df_filtered$project_id)) + +missing_repo_ids <- setdiff(manifest_df$repo_id, count_df_filtered$project_id) + +write.csv(count_df_filtered, "/mmfs1/gscratch/comdata/users/mjilg/govdoc-cr-data/final_data/metadata/final_0207_CONTRIBUTING_weekly_count_data.csv", row.names =FALSE) diff --git a/mlm/contributing_did_prep.R b/mlm/contributing_did_prep.R index 7ffc6e4..0fd4cb4 100644 --- a/mlm/contributing_did_prep.R +++ b/mlm/contributing_did_prep.R @@ -1,18 +1,19 @@ library(dplyr) library(lubridate) library(rdd) +library(tidyr) -contributing_df_filepath <- "/mmfs1/gscratch/comdata/users/mjilg/govdoc-cr-data/final_data/CONTRIBUTING_weekly_count_data.csv" +contributing_df_filepath <- "/mmfs1/gscratch/comdata/users/mjilg/govdoc-cr-data/final_data/metadata/final_0207_CONTRIBUTING_weekly_count_data.csv" df = read.csv(contributing_df_filepath, header = TRUE) #EDA -var(df$commit_count) # 325.5261 -mean(df$commit_count) # 7.743385 +var(df$commit_count) # 349.06 +mean(df$commit_count) # 8.371495 median(df$commit_count) # 1 -mean(df$age) # 4838.649 days -mean(df$age_at_commit) # 2141.996 days -median(df$age) # 4597 days -median(df$age_at_commit) # 1603 days +mean(df$age) # 4939.859 +mean(df$age_at_commit) # 2286.772 days +median(df$age) #4738 says +median(df$age_at_commit) # 1806 days # scale and log-transform df$scaled_age <- scale(df$age) @@ -21,10 +22,17 @@ df$log1p_count <- log1p(df$commit_count) #getting IK Bandwidth get_optimal_bandwidth <- function(df){ - IKbandwidth(df$week_index, df$log1p_count, cutpoint = 0, verbose = FALSE, kernel = "triangular") + bw <- tryCatch({ + IKbandwidth(df$relative_week, df$log1p_count, cutpoint = 0, verbose = FALSE, kernel = "triangular") + }, error = function(e) { + NA + }) } mean_optimal_bandwidth <- df %>% group_by(project_id) %>% summarise(optimal_bandwidth = get_optimal_bandwidth(cur_data())) %>% - summarise(mean_optimal_bandwidth = mean(optimal_bandwidth)) \ No newline at end of file + 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a/mlm/models/020125_contributing_model.rda b/mlm/models/020125_contributing_model.rda deleted file mode 100644 index aea3643..0000000 Binary files a/mlm/models/020125_contributing_model.rda and /dev/null differ diff --git a/mlm/models/020325_readme_model.rda b/mlm/models/020325_readme_model.rda deleted file mode 100644 index f119cb0..0000000 Binary files a/mlm/models/020325_readme_model.rda and /dev/null differ diff --git a/mlm/readme_did_prep.R b/mlm/readme_did_prep.R index 6eed678..570cf4a 100644 --- a/mlm/readme_did_prep.R +++ b/mlm/readme_did_prep.R @@ -3,7 +3,7 @@ library(dplyr) library(lubridate) library(rdd) -readme_df_filepath <- "/mmfs1/gscratch/comdata/users/mjilg/govdoc-cr-data/final_data/README_weekly_count_data.csv" +readme_df_filepath <- "/mmfs1/gscratch/comdata/users/mjilg/govdoc-cr-data/final_data/metadata/final_0207_README_weekly_count_data.csv" df = read.csv(readme_df_filepath, header = TRUE) #filtered_df <- df |> @@ -13,12 +13,12 @@ df = read.csv(readme_df_filepath, header = TRUE) #write.csv(filtered_df, output_filepath, row.names = FALSE) #EDA -var(df$commit_count) # 112.4945 -mean(df$commit_count) # 2.431342 +var(df$commit_count) # 207.7579 +mean(df$commit_count) # 4.31725 median(df$commit_count) # 0 -mean(df$age) # 4911.734 days -mean(df$age_at_commit) # 197.296 days -median(df$age) # 4689 days +mean(df$age) # 5074.828 +mean(df$age_at_commit) # 533.7488 +median(df$age) # 4876 median(df$age_at_commit) # 0 days # scale and log-transform @@ -29,12 +29,17 @@ df$log1p_count <- log1p(df$commit_count) #getting IK Bandwidth get_optimal_bandwidth <- function(df){ - IKbandwidth(df$week_index, df$log1p_count, cutpoint = 0, verbose = FALSE, kernel = "triangular") + bw <- tryCatch({ + IKbandwidth(df$relative_week, df$log1p_count, cutpoint = 0, verbose = FALSE, kernel = "triangular") + }, error = function(e) { + NA + }) } mean_optimal_bandwidth <- df %>% group_by(project_id) %>% summarise(optimal_bandwidth = get_optimal_bandwidth(cur_data())) %>% + drop_na(optimal_bandwidth) |> summarise(mean_optimal_bandwidth = mean(optimal_bandwidth)) -#Mean Optimal Bandwidth: 5.44841 +#Mean Optimal Bandwidth: 5.471781 diff --git a/plots/cr-0203-contributing-blup.png b/plots/cr-0203-contributing-blup.png deleted file mode 100644 index eb5e589..0000000 Binary files a/plots/cr-0203-contributing-blup.png and /dev/null differ diff --git a/plots/cr-0203-ranef-readability.png b/plots/cr-0203-ranef-readability.png deleted file mode 100644 index 403b9e9..0000000 Binary files a/plots/cr-0203-ranef-readability.png and /dev/null differ diff --git a/plots/cr-0203-wc-density.png b/plots/cr-0203-wc-density.png deleted file mode 100644 index 5123a5b..0000000 Binary files a/plots/cr-0203-wc-density.png and /dev/null differ diff --git a/plots/cr-020325-gam-introduction.png b/plots/cr-020325-gam-introduction.png deleted file mode 100644 index 1b8114f..0000000 Binary files a/plots/cr-020325-gam-introduction.png and /dev/null differ diff --git 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