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mw-lifecycle-analysis/p2/quest/parallel-mw-olmo-info-cat.log

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setting up the environment by loading in conda environment at Thu Sep 4 11:14:26 CDT 2025
running the olmo labeling job at Thu Sep 4 11:14:26 CDT 2025
----------------------------------------
srun job start: Thu Sep 4 11:14:27 CDT 2025
Job ID: 3273582
Username: nws8519
Queue: gengpu
Account: p32852
----------------------------------------
The following variables are not
guaranteed to be the same in the
prologue and the job run script
----------------------------------------
PATH (in prologue) : /home/nws8519/.conda/envs/olmo/bin:/software/miniconda3/4.12.0/condabin:/home/nws8519/.local/bin:/home/nws8519/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/lpp/mmfs/bin:/hpc/usertools
WORKDIR is: /home/nws8519
----------------------------------------
W0904 11:14:40.413000 1736745 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766]
W0904 11:14:40.413000 1736745 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 1736745 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] Setting OMP_NUM_THREADS environment variable for each process to be 1 in default, to avoid your system being overloaded, please further tune the variable for optimal performance in your application as needed.
W0904 11:14:40.413000 1736745 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 1736746 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766]
W0904 11:14:40.413000 1736746 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 1736746 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] Setting OMP_NUM_THREADS environment variable for each process to be 1 in default, to avoid your system being overloaded, please further tune the variable for optimal performance in your application as needed.
W0904 11:14:40.413000 1736746 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 2769136 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766]
W0904 11:14:40.413000 2769136 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 2769136 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] Setting OMP_NUM_THREADS environment variable for each process to be 1 in default, to avoid your system being overloaded, please further tune the variable for optimal performance in your application as needed.
W0904 11:14:40.413000 2769136 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 2769137 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766]
W0904 11:14:40.413000 2769137 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
W0904 11:14:40.413000 2769137 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] Setting OMP_NUM_THREADS environment variable for each process to be 1 in default, to avoid your system being overloaded, please further tune the variable for optimal performance in your application as needed.
W0904 11:14:40.413000 2769137 /gpfs/home/nws8519/.conda/envs/olmo/lib/python3.11/site-packages/torch/distributed/run.py:766] *****************************************
[nltk_data] Downloading package punkt to /home/nws8519/nltk_data...
[nltk_data] Downloading package punkt to /home/nws8519/nltk_data...
[nltk_data] Downloading package punkt to /home/nws8519/nltk_data...
[nltk_data] Downloading package punkt to /home/nws8519/nltk_data...
[nltk_data] Package punkt is already up-to-date![nltk_data] Package punkt is already up-to-date!
[nltk_data] Package punkt is already up-to-date![nltk_data] Package punkt is already up-to-date!
[nltk_data] Downloading package punkt_tab to
[nltk_data] /home/nws8519/nltk_data...[nltk_data] Downloading package punkt_tab to
[nltk_data] /home/nws8519/nltk_data...
[nltk_data] Downloading package punkt_tab to
[nltk_data] /home/nws8519/nltk_data...[nltk_data] Downloading package punkt_tab to
[nltk_data] /home/nws8519/nltk_data...
[nltk_data] Package punkt_tab is already up-to-date![nltk_data] Package punkt_tab is already up-to-date!
[nltk_data] Package punkt_tab is already up-to-date![nltk_data] Package punkt_tab is already up-to-date!
/home/nws8519/git/mw-lifecycle-analysis/p2/quest/python_scripts/olmo_parallel_cat.py:120: DtypeWarning: Columns (21) have mixed types. Specify dtype option on import or set low_memory=False.
df = pd.read_csv("/home/nws8519/git/mw-lifecycle-analysis/p2/quest/072525_pp_biberplus_labels.csv")
/home/nws8519/git/mw-lifecycle-analysis/p2/quest/python_scripts/olmo_parallel_cat.py:120: DtypeWarning: Columns (21) have mixed types. Specify dtype option on import or set low_memory=False.
df = pd.read_csv("/home/nws8519/git/mw-lifecycle-analysis/p2/quest/072525_pp_biberplus_labels.csv")
/home/nws8519/git/mw-lifecycle-analysis/p2/quest/python_scripts/olmo_parallel_cat.py:120: DtypeWarning: Columns (21) have mixed types. Specify dtype option on import or set low_memory=False.
df = pd.read_csv("/home/nws8519/git/mw-lifecycle-analysis/p2/quest/072525_pp_biberplus_labels.csv")
[rank3]:[W904 11:15:22.374478896 ProcessGroupNCCL.cpp:4715] [PG ID 0 PG GUID 0 Rank 3] using GPU 1 as device used by this process is currently unknown. This can potentially cause a hang if this rank to GPU mapping is incorrect. You can pecify device_id in init_process_group() to force use of a particular device.
/home/nws8519/git/mw-lifecycle-analysis/p2/quest/python_scripts/olmo_parallel_cat.py:120: DtypeWarning: Columns (21) have mixed types. Specify dtype option on import or set low_memory=False.
df = pd.read_csv("/home/nws8519/git/mw-lifecycle-analysis/p2/quest/072525_pp_biberplus_labels.csv")
[rank1]:[W904 11:15:22.049509730 ProcessGroupNCCL.cpp:4715] [PG ID 0 PG GUID 0 Rank 1] using GPU 1 as device used by this process is currently unknown. This can potentially cause a hang if this rank to GPU mapping is incorrect. You can pecify device_id in init_process_group() to force use of a particular device.
[rank2]:[W904 11:15:22.461549051 ProcessGroupNCCL.cpp:4715] [PG ID 0 PG GUID 0 Rank 2] using GPU 0 as device used by this process is currently unknown. This can potentially cause a hang if this rank to GPU mapping is incorrect. You can pecify device_id in init_process_group() to force use of a particular device.
Fetching 12 files: 0%| | 0/12 [00:00<?, ?it/s]Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Fetching 12 files: 8%|▊ | 1/12 [03:13<35:25, 193.27s/it]Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`
Fetching 12 files: 17%|█▋ | 2/12 [04:23<20:11, 121.10s/it]Xet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`