templates: swap EB Garamond for Libertinus Serif

EB Garamond's bold weight ships with only 127 cmapped glyphs --- no
Latin Extended-A, no Vietnamese, no Greek, no Cyrillic, no fi/fl
ligatures --- so any bold text containing accented characters
(Polish, Czech, Vietnamese, etc., as well as bold author names in
citations) renders as tofu boxes or font-fallback substitutions.

Switch the default body font in paper_template, memo_template, and
letter_template to Libertinus Serif. It ships in texlive-fonts-extra,
has comprehensive Latin / Vietnamese / Greek / Cyrillic coverage in
every weight, and includes all the standard f-ligatures explicitly.

Each template also picks up a commented-out
\\setmainfont{Garamond Premier Pro} block plus a short note: Adobe
Garamond Premier Pro is Mako's preferred body font but is commercial
and not redistributable, so the public templates default to
Libertinus and CDSC members can swap in once they have the font
installed (e.g., in ~/.fonts/).

README updated to match.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

README

@@ -47,8 +47,8 @@ On other systems, installing a full TeX Live distribution should provide
 everything needed.
 
 All four templates build with LuaLaTeX (via latexmk -lualatex). The text
-fonts are EB Garamond (provided by texlive-fonts-extra) and TeX Gyre
+fonts are Libertinus Serif and TeX Gyre Heros, both provided by
-Heros.
+texlive-fonts-extra.
 
 ================================
 === Accessibility ==============

letter_template/text.tex

@@ -10,7 +10,15 @@
 % (-- => en-dash, --- => em-dash, `` and '' => curly quotes), so
 % re-enable them globally for every font loaded below.
 \defaultfontfeatures{Ligatures=TeX}
-\setmainfont{EB Garamond}
+\setmainfont{Libertinus Serif}
+% Mako prefers Adobe Garamond Premier Pro
+% (https://fonts.adobe.com/fonts/garamond-premier-pro). It is a
+% commercial font and is not redistributable, so the templates default
+% to the free Libertinus Serif above. If you have the font installed
+% (e.g., dropped into ~/.fonts/), comment the line above and uncomment
+% the next one. CDSC members can contact Mako (mako@atdot.cc) for the
+% font files.
+% \setmainfont{Garamond Premier Pro}
 \setsansfont{TeX Gyre Heros}
 
 \usepackage[letterpaper,left=1.3in,right=1.3in,top=0.8in,bottom=0.8in]{geometry}

memo_template/text.tex

@@ -18,7 +18,15 @@
 % (-- => en-dash, --- => em-dash, `` and '' => curly quotes), so
 % re-enable them globally for every font loaded below.
 \defaultfontfeatures{Ligatures=TeX}
-\setmainfont{EB Garamond}
+\setmainfont{Libertinus Serif}
+% Mako prefers Adobe Garamond Premier Pro
+% (https://fonts.adobe.com/fonts/garamond-premier-pro). It is a
+% commercial font and is not redistributable, so the templates default
+% to the free Libertinus Serif above. If you have the font installed
+% (e.g., dropped into ~/.fonts/), comment the line above and uncomment
+% the next one. CDSC members can contact Mako (mako@atdot.cc) for the
+% font files.
+% \setmainfont{Garamond Premier Pro}
 \setsansfont{TeX Gyre Heros}
 
 \usepackage[letterpaper,left=1.65in,right=1.65in,top=1.3in,bottom=1.2in]{geometry}

paper_template/.gitignore

@@ -13,5 +13,3 @@
 /*.ttt
 /*.bcf
 /*.run.xml
-/figures/*
-/*.tex

paper_template/Makefile

@@ -1,11 +1,13 @@
 #!/usr/bin/make
 
-all: $(patsubst %.Rtex,%.pdf,$(wildcard *.Rtex)) 
+all: $(patsubst %.tex,%.pdf,$(wildcard *.tex)) 
 
-%.tex: %.Rtex
+# use the following section for Rnw/knitr documents
-	Rscript -e "library(knitr); knit('$<')"
+# all: $(patsubst %.Rnw,%.pdf,$(wildcard *.Rnw))
+# %.tex: %.Rnw
+#	Rscript -e "library(knitr); knit('$<')"
 
-%.pdf: %.tex
+%.pdf: %.tex 
 	latexmk -f -lualatex $<
 
 clean: 
@@ -13,9 +15,9 @@ clean:
 	rm -f *.tmp *.run.xml
 	rm -f vc
 	rm -f *.bbl
-	# the following lines are useful for Rtex/knitr
+	# the following lines are useful for Rnw/knitr
-	rm -rf cache/ figure/
+	# rm -rf cache/ figure/
-	rm -f *.tex
+	# rm -f *.tex
 
 viewpdf: all
 	evince *.pdf
@@ -25,4 +27,4 @@ vc:	resources/vc-git
 pdf: all
 
 .PHONY: clean all
-.PRECIOUS: %.tex
+# .PRECIOUS: %.tex

paper_template/resources/preamble.R

@@ -1,50 +0,0 @@
-bold <- function(x) {paste('{\\textbf{',x,'}}', sep ='')}
-gray <- function(x) {paste('{\\textcolor{gray}{',x,'}}', sep ='')}
-wrapify <- function (x) {paste("{", x, "}", sep="")}
-
-# load("knitr_data.RData"); now broken up into small files so we'll bring 'em all in together
-r <- do.call("c", lapply(paste("knitr_rdata/", list.files("knitr_rdata"), sep=""),
-                         function (x) {load(x); return(r)}))
-
-attach(r)
-
-f <- function (x) {formatC(x, format="d", big.mark=',')}
-
-format.percent <- function(x) {paste(f(x*100),"\\%",sep='')}
-
-format.day.ordinal <- function(x) {
-    day <- format(x,format="%d")
-    daylast <- substr(day,nchar(day),nchar(day))
-    dayfirst <- substr(day,1,1)
-    if(dayfirst == '0')
-        day = daylast
-
-    if( daylast == "1")
-        day <- paste0(day,"st")
-    else if(daylast == "2")
-        day <- paste0(day,"nd")
-    else if (daylast == "3")
-        day <- paste0(day,"rd")
-    else
-        day <- paste0(day,"th")
-        
-    return(day)
-}
-
-format.month <- function(x){
-    return( format(x,format='%B %Y'))
-}
-
-format.date <- function(x) {
-    return(paste(format(x,format = '%B'),format.day.ordinal(x),format(x,format='%Y'),sep=' '))
-}
-
-format.pvalue <- function (x, digits=3) {
-    threshold <- 1*10^(-1*digits)
-    x <- round(x, digits)
-    if (x < threshold) {
-        return(paste("p<", threshold, sep=""))
-    } else {
-        return(paste("p=", x, sep=""))
-    }
-}

paper_template/text.tex

@@ -13,23 +13,20 @@
 \usepackage{tagpdf}
 \tagpdfsetup{activate-all}
 
-<<init, echo=FALSE>>=
-knit_hooks$set(document = function(x) {
-  x <- sub('\\usepackage[]{xcolor}',
-           '\\usepackage[dvipsnames]{xcolor}', x, fixed = TRUE)
-  x
-})
-opts_chunk$set(fig.path="figures/knitr-")
-
-source("resources/preamble.R")
-@
-
 \usepackage{fontspec}
 % fontspec disables the classic TeX input ligatures by default
 % (-- => en-dash, --- => em-dash, `` and '' => curly quotes), so
 % re-enable them globally for every font loaded below.
 \defaultfontfeatures{Ligatures=TeX}
-\setmainfont{EB Garamond}
+\setmainfont{Libertinus Serif}
+% Mako prefers Adobe Garamond Premier Pro
+% (https://fonts.adobe.com/fonts/garamond-premier-pro). It is a
+% commercial font and is not redistributable, so the templates default
+% to the free Libertinus Serif above. If you have the font installed
+% (e.g., dropped into ~/.fonts/), comment the line above and uncomment
+% the next one. CDSC members can contact Mako (mako@atdot.cc) for the
+% font files.
+% \setmainfont{Garamond Premier Pro}
 \setsansfont{TeX Gyre Heros}
 \usepackage{wrapfig}
 
@@ -65,7 +62,7 @@ source("resources/preamble.R")
 \makeatother
 \newcommand*\samethanks[1][\value{footnote}]{\footnotemark[#1]}
 
-% add bibliographic stuff
+% add bibliographic stuff 
 \usepackage[american]{babel}
 \usepackage{csquotes}
 \usepackage[natbib=true, style=apa, backend=biber]{biblatex}
@@ -128,7 +125,7 @@ fox jumps over the lazy dog.
 % between 45-90 characters and a rule of thumb for typesetting is that you
 % should be able to fit between 2-3 alphabets on one line.  Generally speaking,
 % the shorter the line length, the better -- and the smaller the linespacing
-% can become.  The following line is 3 alphabets (73 characters).
+% can become.  The following line is 3 alphabets (73 characters). 
 
 abcdefghijklmnopqrstuvwxyzabcdefghijklmnopqrstuvwxyzabcdefghijklmnopqrstuvwxyz
 
@@ -148,14 +145,45 @@ brown fox jumps over the lazy dog.  The quick brown fox jumps over the
 lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
 fox jumps over the lazy dog \citep{989866}.
 
-\begin{table}
+The quick brown fox jumps over the lazy dog.  The quick brown fox jumps
-  \centering
+over the lazy dog.  The quick brown fox jumps over the lazy dog.  The
-<<test_table, echo=FALSE>>=
+quick brown fox jumps over the lazy dog.  The quick brown fox jumps over
-kable(form.copy, format="latex")
+the lazy dog.  The quick brown fox jumps over the lazy dog.  The quick
-@
+brown fox jumps over the lazy dog.  The quick brown fox jumps over the
-\caption{This is a test table. There are \Sexpr{f(nrow(form.copy))} rows in the table.}
+lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
-\label{tab:test}
+fox jumps over the lazy dog \citep{989866}.
-\end{table}
+
+The quick brown fox jumps over the lazy dog.  The quick brown fox jumps
+over the lazy dog.  The quick brown fox jumps over the lazy dog.  The
+quick brown fox jumps over the lazy dog.  The quick brown fox jumps over
+the lazy dog.  The quick brown fox jumps over the lazy dog.  The quick
+brown fox jumps over the lazy dog.  The quick brown fox jumps over the
+lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
+fox jumps over the lazy dog \citep{989866}.
+
+The quick brown fox jumps over the lazy dog.  The quick brown fox jumps
+over the lazy dog.  The quick brown fox jumps over the lazy dog.  The
+quick brown fox jumps over the lazy dog.  The quick brown fox jumps over
+the lazy dog.  The quick brown fox jumps over the lazy dog.  The quick
+brown fox jumps over the lazy dog.  The quick brown fox jumps over the
+lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
+fox jumps over the lazy dog \citep{989866}.
+
+The quick brown fox jumps over the lazy dog.  The quick brown fox jumps
+over the lazy dog.  The quick brown fox jumps over the lazy dog.  The
+quick brown fox jumps over the lazy dog.  The quick brown fox jumps over
+the lazy dog.  The quick brown fox jumps over the lazy dog.  The quick
+brown fox jumps over the lazy dog.  The quick brown fox jumps over the
+lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
+fox jumps over the lazy dog \citep{989866}.
+
+The quick brown fox jumps over the lazy dog.  The quick brown fox jumps
+over the lazy dog.  The quick brown fox jumps over the lazy dog.  The
+quick brown fox jumps over the lazy dog.  The quick brown fox jumps over
+the lazy dog.  The quick brown fox jumps over the lazy dog.  The quick
+brown fox jumps over the lazy dog.  The quick brown fox jumps over the
+lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
+fox jumps over the lazy dog \citep{989866}.
 
 The quick brown fox jumps over the lazy dog.  The quick brown fox jumps
 over the lazy dog.  The quick brown fox jumps over the lazy dog.  The
@@ -180,4 +208,4 @@ fox jumps over the lazy dog \citep{989866}.
 
 \end{document}
 
-%  LocalWords:
+%  LocalWords: