groceryheist/ml_measurement_error_public
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update sbatch for new directory and default output filename.

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This commit is contained in:
Nathan TeBlunthuis
2022-06-28 18:40:29 -07:00
parent 56dfdacc2e
commit 003733f22f
5 changed files with 29 additions and 6 deletions
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8
simulations/Makefile
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@@ -1,20 +1,20 @@
SHELL=bash
Ns=[1000,10000,25000]
Ns=[500,1000,10000,25000]
ms=[50, 100, 250, 500]
seeds=[$(shell seq -s, 1 250)]
all:remembr.RDS
srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
example_1_jobs: example_1.R
grid_sweep.py --command "Rscript example_1.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py
grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
example_1.feather: example_1_jobs
rm -f example_1.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
example_2_jobs: example_2.R
grid_sweep.py --command "Rscript example_2.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs