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update plotting code and makefile

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Nathan TeBlunthuis
2022-06-30 23:00:28 -07:00
parent 588bdd7ed7
commit cb1e895ff1
11 changed files with 1360 additions and 13 deletions
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simulations/Makefile
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@@ -1,14 +1,14 @@
SHELL=bash
Ns=[500,1000,10000,25000]
Ns=[500,1000,10000]
ms=[50, 100, 250, 500]
seeds=[$(shell seq -s, 1 250)]
all:remembr.RDS
srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py
example_1_jobs: 01_two_covariates.R
grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
example_1.feather: example_1_jobs
@@ -24,28 +24,30 @@ example_2.feather: example_2_jobs
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs
sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
example_2_B_jobs: example_2_B.R
grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
# example_2_B_jobs: example_2_B.R
# grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
example_2_B.feather: example_2_B_jobs
rm -f example_2_B.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
# example_2_B.feather: example_2_B_jobs
# rm -f example_2_B.feather
# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
example_3_jobs: example_3.R
grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
example_3_jobs: 03_depvar_differential.R
grid_sweep.py --command "Rscript 03_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
example_3.feather: example_3_jobs
rm -f example_3.feather
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs
sbatch --wait --verbose --array=3001-6000 run_simulation.sbatch 0 example_3_jobs
remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather
${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3"
${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
# ${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
clean:
rm *.feather
rm remembr.RDS
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs