groceryheist/ml_measurement_error_public
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use spr and skx nodes

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This commit is contained in:
Nathan TeBlunthuis 2025-06-06 07:25:46 -07:00
parent 7cad9fea58
commit d36c5022ee
2 changed files with 4 additions and 4 deletions
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4
multiple_iv_simulations/Makefile
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@ -16,11 +16,11 @@ joblists:example_1_jobs example_2_jobs example_3_jobs
grid_sweep_script=../simulations/grid_sweep.py grid_sweep_script=../simulations/grid_sweep.py
example_1_jobs: 01_indep_differential.R simulation_base.R ${grid_sweep_script} skx_1.sbatch ../misclassificationmodels example_1_jobs: 01_indep_differential.R simulation_base.R ${grid_sweep_script} skx_dev.sbatch ../misclassificationmodels
${srun} --wait uv run ${grid_sweep_script} --command "Rscript 01_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[1]}' --outfile example_1_jobs ${srun} --wait uv run ${grid_sweep_script} --command "Rscript 01_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[1]}' --outfile example_1_jobs
example_1.feather: example_1_jobs my_pylauncher.py example_1.feather: example_1_jobs my_pylauncher.py
sbatch -J "multiple iv measerr correction" skx_2.sbatch my_pylauncher.py $< --cores 1 sbatch -J "multiple iv measerr correction" spr_2.sbatch my_pylauncher.py $< --cores 1
remembr.RDS:example_1.feather remembr.RDS:example_1.feather
# rm -f remembr.RDS # rm -f remembr.RDS

4
multiple_iv_simulations/skx_1.sbatch
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@ -1,11 +1,11 @@
#!/bin/bash #!/bin/bash
#SBATCH --account=ECS24013 #SBATCH --account=ECS24013
#SBATCH --partition=skx #SBATCH --partition=skx-dev
#SBATCH --nodes=1 #SBATCH --nodes=1
#SBATCH --chdir=/scratch/10114/nathante/ml_measurement_error_public/multiple_iv_simulations #SBATCH --chdir=/scratch/10114/nathante/ml_measurement_error_public/multiple_iv_simulations
#SBATCH --error="sbatch_log/%x_%A_%a.err" #SBATCH --error="sbatch_log/%x_%A_%a.err"
#SBATCH --output="sbatch_log/%x_%A_%a.out" #SBATCH --output="sbatch_log/%x_%A_%a.out"
#SBATCH --time=48:00:00 #SBATCH --time=4:00:00
source ~/.bashrc source ~/.bashrc
"$@" "$@"