85 lines
4.2 KiB
Makefile
85 lines
4.2 KiB
Makefile
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SHELL=bash
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Ns=[1000, 2000, 4000, 8000]
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ms=[100, 200, 400, 800]
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seeds=[$(shell seq -s, 1 100)]
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explained_variances=[0.1]
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all:remembr.RDS
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srun=srun -A comdata -p compute-bigmem --time=6:00:00 --mem 4G -c 1
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joblists:example_1_jobs example_2_jobs example_3_jobs
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# test_true_z_jobs: test_true_z.R simulation_base.R
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# grid_sweep.py --command "Rscript test_true_z.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["test_true_z.feather"], "y_explained_variancevari":${explained_variances}, "Bzx":${Bzx}}' --outfile test_true_z_jobsb
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# test_true_z.feather: test_true_z_jobs
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# rm -f test_true_z.feather
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# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 test_true_z_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 test_true_z_jobs
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example_1_jobs: 01_two_covariates.R simulation_base.R
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grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"], "y_explained_variance":${explained_variances}, "Bzx":[0.1]}' --outfile example_1_jobs
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example_1.feather: example_1_jobs
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rm -f example_1.feather
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sbatch --wait --verbose --array=1-$(shell cat example_1_jobs | wc -l) run_simulation.sbatch 0 example_1_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
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example_2_jobs: 02_indep_differential.R simulation_base.R
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grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"],"y_explained_variance":${explained_variances}, "Bzy":[-0.3],"Bxy":[0.3],"Bzx":[0.3], "outcome_formula":["y~x+z"], "proxy_formula":["w_pred~y*z*x"], "truth_formula":["x~z"]}' --outfile example_2_jobs
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example_2.feather: example_2_jobs
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rm -f example_2.feather
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sbatch --wait --verbose --array=1-$(shell cat example_2_jobs | wc -l) run_simulation.sbatch 0 example_2_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
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# example_2_B_jobs: example_2_B.R
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# grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
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# example_2_B.feather: example_2_B_jobs
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# rm -f example_2_B.feather
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# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
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example_3_jobs: 03_depvar.R simulation_base.R
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grid_sweep.py --command "Rscript 03_depvar.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"], "y_explained_variance":${explained_variances}}' --outfile example_3_jobs
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example_3.feather: example_3_jobs
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rm -f example_3.feather
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sbatch --wait --verbose --array=1-$(shell cat example_3_jobs | wc -l) run_simulation.sbatch 0 example_3_jobs
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example_4_jobs: 04_depvar_differential.R simulation_base.R
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grid_sweep.py --command "Rscript 04_depvar_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_4.feather"], "y_explained_variance":${explained_variances}}' --outfile example_4_jobs
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example_4.feather: example_4_jobs
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rm -f example_4.feather
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sbatch --wait --verbose --array=1-$(shell cat example_4_jobs | wc -l) run_simulation.sbatch 0 example_4_jobs
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remembr.RDS:example_1.feather example_2.feather example_3.feather example_4.feather plot_example.R plot_dv_example.R
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rm -f remembr.RDS
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${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
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${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
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${srun} Rscript plot_dv_example.R --infile example_3.feather --name "plot.df.example.3"
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${srun} Rscript plot_dv_example.R --infile example_4.feather --name "plot.df.example.4"
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clean:
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rm *.feather
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rm -f remembr.RDS
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rm -f example_*_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
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# example_2_B_mecor_jobs:
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# grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
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# example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
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# rm -f example_2_B_mecor.feather
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# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
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# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
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