62 lines
2.7 KiB
Makefile
62 lines
2.7 KiB
Makefile
|
|
SHELL=bash
|
|
|
|
Ns=[500,1000,10000,25000]
|
|
ms=[50, 100, 250, 500]
|
|
seeds=[$(shell seq -s, 1 250)]
|
|
all:remembr.RDS
|
|
|
|
srun=srun -A comdata -p compute-bigmem --time=10:00:00 --mem 4G -c 1
|
|
|
|
example_1_jobs: 01_two_covariates.R simulation_base.R grid_sweep.py
|
|
grid_sweep.py --command "Rscript 01_two_covariates.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_1.feather"]}' --outfile example_1_jobs
|
|
|
|
example_1.feather: example_1_jobs
|
|
rm -f example_1.feather
|
|
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_1_jobs
|
|
sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_1_jobs
|
|
|
|
example_2_jobs: example_2.R
|
|
grid_sweep.py --command "Rscript 02_indep_differential.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2.feather"]}' --outfile example_2_jobs
|
|
|
|
example_2.feather: example_2_jobs
|
|
rm -f example_2.feather
|
|
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_jobs
|
|
sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_jobs
|
|
|
|
example_2_B_jobs: example_2_B.R
|
|
grid_sweep.py --command "Rscript example_2_B.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B.feather"]}' --outfile example_2_B_jobs
|
|
|
|
example_2_B.feather: example_2_B_jobs
|
|
rm -f example_2_B.feather
|
|
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_jobs
|
|
|
|
example_3_jobs: example_3.R
|
|
grid_sweep.py --command "Rscript example_3.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_3.feather"]}' --outfile example_3_jobs
|
|
|
|
example_3.feather: example_3_jobs
|
|
rm -f example_3.feather
|
|
sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_3_jobs
|
|
|
|
|
|
remembr.RDS:example_2_B.feather example_1.feather example_2.feather example_3.feather
|
|
${srun} Rscript plot_example.R --infile example_1.feather --name "plot.df.example.1"
|
|
${srun} Rscript plot_example.R --infile example_2.feather --name "plot.df.example.2"
|
|
${srun} Rscript plot_example.R --infile example_2_B.feather --name "plot.df.example.2B"
|
|
${srun} Rscript plot_example.R --infile example_3.feather --name "plot.df.example.3"
|
|
|
|
|
|
|
|
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_jobs
|
|
|
|
# example_2_B_mecor_jobs:
|
|
# grid_sweep.py --command "Rscript example_2_B_mecor.R" --arg_dict '{"N":${Ns},"m":${ms}, "seed":${seeds}, "outfile":["example_2_B_mecor.feather"]}' --outfile example_2_B_mecor_jobs
|
|
|
|
# example_2_B_mecor.feather:example_2_B_mecor.R example_2_B_mecor_jobs
|
|
# rm -f example_2_B_mecor.feather
|
|
# sbatch --wait --verbose --array=1-3000 run_simulation.sbatch 0 example_2_B_mecor_jobs
|
|
# sbatch --wait --verbose --array=3001-6001 run_simulation.sbatch 0 example_2_B_mecor_jobs
|
|
|
|
|
|
|