updated to use biber/biblatex instead of bitex

paper_template/.gitignore

@@ -11,3 +11,5 @@
 /*.fdb_latexmk
 /*.fls
 /*.ttt
+/*.bcf
+/*.run.xml

paper_template/Makefile

@@ -7,19 +7,14 @@ all: $(patsubst %.tex,%.pdf,$(wildcard *.tex))
 # %.tex: %.Rnw
 #	Rscript -e "library(knitr); knit('$<')"
 
-refs-processed.bib: 
-	perl -p -e 's/©//' refs.bib > refs-processed.bib
-	perl -0pe 's/,\s+(file|abstract) = \{.*?\}(,\n|\n)/\2/sg' refs-processed.bib |sponge refs-processed.bib
-	recode -d u8..ltex < refs-processed.bib | sponge refs-processed.bib
-
-%.pdf: %.tex refs-processed.bib vc
+%.pdf: %.tex 
 	latexmk -f -pdf $<
 
 clean: 
 	latexmk -C *.tex
-	rm -f *.tmp
+	rm -f *.tmp *.run.xml
 	rm -f vc
-	rm -f refs-processed.bib
+	rm -f *.bbl
 	# the following lines are useful for Rnw/knitr
 	# rm -rf cache/ figure/
 	# rm -f *.tex

paper_template/text.tex

@@ -8,8 +8,7 @@
 % with article-3 \chapterstyle, change to: \pagestyle{memo}
 \pagestyle{mako-mem}
 
-\usepackage{ucs}
-\usepackage[utf8x]{inputenc}
+\usepackage[utf8]{inputenc}
 
 \usepackage[T1]{fontenc}
 \usepackage{textcomp}
@@ -34,7 +33,19 @@
     urlcolor=Blue, unicode=true}
 
 % add bibliographic stuff 
-\usepackage[round]{natbib}
+% add bibliographic stuff 
+\usepackage[american]{babel}
+\usepackage{csquotes}
+\usepackage[natbib=true, style=apa, backend=biber]{biblatex}
+\addbibresource{refs.bib}
+\DeclareLanguageMapping{american}{american-apa}
+
+\defbibheading{secbib}[\bibname]{%
+  \section*{#1}%
+  \markboth{#1}{#1}%
+  \baselineskip 14.2pt%
+  \prebibhook}
+
 \def\citepos#1{\citeauthor{#1}'s (\citeyear{#1})}
 \def\citespos#1{\citeauthor{#1}' (\citeyear{#1})}
 
@@ -162,10 +173,8 @@ lazy dog.  The quick brown fox jumps over the lazy dog.  The quick brown
 fox jumps over the lazy dog \citep{989866}.
 
 % bibliography here
-\renewcommand{\bibsection}{\section{\bibname}\prebibhook}
-\baselineskip 14.2pt
-\bibliography{refs-processed}
-\bibliographystyle{apalike}
+\printbibliography[title = {References}, heading=secbib]
+
 
 \end{document}